Serveur d'exploration sur le phanerochaete

Attention, ce site est en cours de développement !
Attention, site généré par des moyens informatiques à partir de corpus bruts.
Les informations ne sont donc pas validées.

Biochemical Characterization of CYP505D6, a Self-Sufficient Cytochrome P450 from the White-Rot Fungus Phanerochaete chrysosporium.

Identifieur interne : 000135 ( Main/Exploration ); précédent : 000134; suivant : 000136

Biochemical Characterization of CYP505D6, a Self-Sufficient Cytochrome P450 from the White-Rot Fungus Phanerochaete chrysosporium.

Auteurs : Kiyota Sakai [Japon] ; Fumiko Matsuzaki [Japon] ; Lisa Wise [Japon] ; Yu Sakai [Japon] ; Sadanari Jindou [Japon] ; Hirofumi Ichinose [Japon] ; Naoki Takaya [Japon] ; Masashi Kato [Japon] ; Hiroyuki Wariishi [Japon] ; Motoyuki Shimizu [Japon]

Source :

RBID : pubmed:30171007

Descripteurs français

English descriptors

Abstract

The activity of a self-sufficient cytochrome P450 enzyme, CYP505D6, from the lignin-degrading basidiomycete Phanerochaete chrysosporium was characterized. Recombinant CYP505D6 was produced in Escherichia coli and purified. In the presence of NADPH, CYP505D6 used a series of saturated fatty alcohols with C9-18 carbon chain lengths as the substrates. Hydroxylation occurred at the ω-1 to ω-6 positions of such substrates with C9-15 carbon chain lengths, except for 1-dodecanol, which was hydroxylated at the ω-1 to ω-7 positions. Fatty acids were also substrates of CYP505D6. Based on the sequence alignment, the corresponding amino acid of Tyr51, which is located at the entrance to the active-site pocket in CYP102A1, was Val51 in CYP505D6. To understand the diverse hydroxylation mechanism, wild-type CYP505D6 and its V51Y variant and wild-type CYP102A1 and its Y51V variant were generated, and the products of their reaction with dodecanoic acid were analyzed. Compared with wild-type CYP505D6, its V51Y variant generated few products hydroxylated at the ω-4 to ω-6 positions. The products generated by wild-type CYP102A1 were hydroxylated at the ω-1 to ω-4 positions, whereas its Y51V variant generated ω-1 to ω-7 hydroxydodecanoic acids. These observations indicated that Val51 plays an important role in determining the regiospecificity of fatty acid hydroxylation, at least that at the ω-4 to ω-6 positions. Aromatic compounds, such as naphthalene and 1-naphthol, were also hydroxylated by CYP505D6. These findings highlight a unique broad substrate spectrum of CYP505D6, rendering it an attractive candidate enzyme for the biotechnological industry.IMPORTANCEPhanerochaete chrysosporium is a white-rot fungus whose metabolism of lignin, aromatic pollutants, and lipids has been most extensively studied. This fungus harbors 154 cytochrome P450-encoding genes in the genome. As evidenced in this study, P. chrysosporium CYP505D6, a fused protein of P450 and its reductase, hydroxylates fatty alcohols (C9-15) and fatty acids (C9-15) at the ω-1 to ω-7 or ω-1 to ω-6 positions, respectively. Naphthalene and 1-naphthol were also hydroxylated, indicating that the substrate specificity of CYP505D6 is broader than those of the known fused proteins CYP102A1 and CYP505A1. The substrate versatility of CYP505D6 makes this enzyme an attractive candidate for biotechnological applications.

DOI: 10.1128/AEM.01091-18
PubMed: 30171007
PubMed Central: PMC6210119


Affiliations:


Links toward previous steps (curation, corpus...)


Le document en format XML

<record>
<TEI>
<teiHeader>
<fileDesc>
<titleStmt>
<title xml:lang="en">Biochemical Characterization of CYP505D6, a Self-Sufficient Cytochrome P450 from the White-Rot Fungus Phanerochaete chrysosporium.</title>
<author>
<name sortKey="Sakai, Kiyota" sort="Sakai, Kiyota" uniqKey="Sakai K" first="Kiyota" last="Sakai">Kiyota Sakai</name>
<affiliation wicri:level="1">
<nlm:affiliation>Department of Applied Biological Chemistry, Faculty of Agriculture, Meijo University, Nagoya, Japan.</nlm:affiliation>
<country xml:lang="fr">Japon</country>
<wicri:regionArea>Department of Applied Biological Chemistry, Faculty of Agriculture, Meijo University, Nagoya</wicri:regionArea>
<wicri:noRegion>Nagoya</wicri:noRegion>
</affiliation>
</author>
<author>
<name sortKey="Matsuzaki, Fumiko" sort="Matsuzaki, Fumiko" uniqKey="Matsuzaki F" first="Fumiko" last="Matsuzaki">Fumiko Matsuzaki</name>
<affiliation wicri:level="4">
<nlm:affiliation>Faculty of Agriculture, Kyushu University, Fukuoka, Japan.</nlm:affiliation>
<country xml:lang="fr">Japon</country>
<wicri:regionArea>Faculty of Agriculture, Kyushu University, Fukuoka</wicri:regionArea>
<orgName type="university">Université de Kyūshū</orgName>
<placeName>
<settlement type="city">Fukuoka</settlement>
<region type="province">Kyūshū</region>
<region type="prefecture">Préfecture de Fukuoka</region>
</placeName>
</affiliation>
<affiliation wicri:level="4">
<nlm:affiliation>Research Center for Transomics Medicine, Medical Institute of Bioregulation, Kyushu University, Fukuoka, Japan.</nlm:affiliation>
<country xml:lang="fr">Japon</country>
<wicri:regionArea>Research Center for Transomics Medicine, Medical Institute of Bioregulation, Kyushu University, Fukuoka</wicri:regionArea>
<orgName type="university">Université de Kyūshū</orgName>
<placeName>
<settlement type="city">Fukuoka</settlement>
<region type="province">Kyūshū</region>
<region type="prefecture">Préfecture de Fukuoka</region>
</placeName>
</affiliation>
</author>
<author>
<name sortKey="Wise, Lisa" sort="Wise, Lisa" uniqKey="Wise L" first="Lisa" last="Wise">Lisa Wise</name>
<affiliation wicri:level="1">
<nlm:affiliation>Department of Applied Biological Chemistry, Faculty of Agriculture, Meijo University, Nagoya, Japan.</nlm:affiliation>
<country xml:lang="fr">Japon</country>
<wicri:regionArea>Department of Applied Biological Chemistry, Faculty of Agriculture, Meijo University, Nagoya</wicri:regionArea>
<wicri:noRegion>Nagoya</wicri:noRegion>
</affiliation>
</author>
<author>
<name sortKey="Sakai, Yu" sort="Sakai, Yu" uniqKey="Sakai Y" first="Yu" last="Sakai">Yu Sakai</name>
<affiliation wicri:level="1">
<nlm:affiliation>Department of Applied Biological Chemistry, Faculty of Agriculture, Meijo University, Nagoya, Japan.</nlm:affiliation>
<country xml:lang="fr">Japon</country>
<wicri:regionArea>Department of Applied Biological Chemistry, Faculty of Agriculture, Meijo University, Nagoya</wicri:regionArea>
<wicri:noRegion>Nagoya</wicri:noRegion>
</affiliation>
</author>
<author>
<name sortKey="Jindou, Sadanari" sort="Jindou, Sadanari" uniqKey="Jindou S" first="Sadanari" last="Jindou">Sadanari Jindou</name>
<affiliation wicri:level="1">
<nlm:affiliation>Faculty of Science and Technology, Meijo University, Nagoya, Japan.</nlm:affiliation>
<country xml:lang="fr">Japon</country>
<wicri:regionArea>Faculty of Science and Technology, Meijo University, Nagoya</wicri:regionArea>
<wicri:noRegion>Nagoya</wicri:noRegion>
</affiliation>
</author>
<author>
<name sortKey="Ichinose, Hirofumi" sort="Ichinose, Hirofumi" uniqKey="Ichinose H" first="Hirofumi" last="Ichinose">Hirofumi Ichinose</name>
<affiliation wicri:level="4">
<nlm:affiliation>Faculty of Agriculture, Kyushu University, Fukuoka, Japan.</nlm:affiliation>
<country xml:lang="fr">Japon</country>
<wicri:regionArea>Faculty of Agriculture, Kyushu University, Fukuoka</wicri:regionArea>
<orgName type="university">Université de Kyūshū</orgName>
<placeName>
<settlement type="city">Fukuoka</settlement>
<region type="province">Kyūshū</region>
<region type="prefecture">Préfecture de Fukuoka</region>
</placeName>
</affiliation>
</author>
<author>
<name sortKey="Takaya, Naoki" sort="Takaya, Naoki" uniqKey="Takaya N" first="Naoki" last="Takaya">Naoki Takaya</name>
<affiliation wicri:level="1">
<nlm:affiliation>Graduate School of Life and Environmental Sciences, University of Tsukuba, Tsukuba, Japan.</nlm:affiliation>
<country xml:lang="fr">Japon</country>
<wicri:regionArea>Graduate School of Life and Environmental Sciences, University of Tsukuba, Tsukuba</wicri:regionArea>
<wicri:noRegion>Tsukuba</wicri:noRegion>
</affiliation>
</author>
<author>
<name sortKey="Kato, Masashi" sort="Kato, Masashi" uniqKey="Kato M" first="Masashi" last="Kato">Masashi Kato</name>
<affiliation wicri:level="1">
<nlm:affiliation>Department of Applied Biological Chemistry, Faculty of Agriculture, Meijo University, Nagoya, Japan.</nlm:affiliation>
<country xml:lang="fr">Japon</country>
<wicri:regionArea>Department of Applied Biological Chemistry, Faculty of Agriculture, Meijo University, Nagoya</wicri:regionArea>
<wicri:noRegion>Nagoya</wicri:noRegion>
</affiliation>
</author>
<author>
<name sortKey="Wariishi, Hiroyuki" sort="Wariishi, Hiroyuki" uniqKey="Wariishi H" first="Hiroyuki" last="Wariishi">Hiroyuki Wariishi</name>
<affiliation wicri:level="4">
<nlm:affiliation>Faculty of Art and Science, Kyushu University, Fukuoka, Japan.</nlm:affiliation>
<country xml:lang="fr">Japon</country>
<wicri:regionArea>Faculty of Art and Science, Kyushu University, Fukuoka</wicri:regionArea>
<orgName type="university">Université de Kyūshū</orgName>
<placeName>
<settlement type="city">Fukuoka</settlement>
<region type="province">Kyūshū</region>
<region type="prefecture">Préfecture de Fukuoka</region>
</placeName>
</affiliation>
</author>
<author>
<name sortKey="Shimizu, Motoyuki" sort="Shimizu, Motoyuki" uniqKey="Shimizu M" first="Motoyuki" last="Shimizu">Motoyuki Shimizu</name>
<affiliation wicri:level="1">
<nlm:affiliation>Department of Applied Biological Chemistry, Faculty of Agriculture, Meijo University, Nagoya, Japan moshimi@meijo-u.ac.jp.</nlm:affiliation>
<country wicri:rule="url">Japon</country>
<wicri:regionArea>Department of Applied Biological Chemistry, Faculty of Agriculture, Meijo University, Nagoya</wicri:regionArea>
<wicri:noRegion>Nagoya</wicri:noRegion>
</affiliation>
</author>
</titleStmt>
<publicationStmt>
<idno type="wicri:source">PubMed</idno>
<date when="2018">2018</date>
<idno type="RBID">pubmed:30171007</idno>
<idno type="pmid">30171007</idno>
<idno type="doi">10.1128/AEM.01091-18</idno>
<idno type="pmc">PMC6210119</idno>
<idno type="wicri:Area/Main/Corpus">000104</idno>
<idno type="wicri:explorRef" wicri:stream="Main" wicri:step="Corpus" wicri:corpus="PubMed">000104</idno>
<idno type="wicri:Area/Main/Curation">000104</idno>
<idno type="wicri:explorRef" wicri:stream="Main" wicri:step="Curation">000104</idno>
<idno type="wicri:Area/Main/Exploration">000104</idno>
</publicationStmt>
<sourceDesc>
<biblStruct>
<analytic>
<title xml:lang="en">Biochemical Characterization of CYP505D6, a Self-Sufficient Cytochrome P450 from the White-Rot Fungus Phanerochaete chrysosporium.</title>
<author>
<name sortKey="Sakai, Kiyota" sort="Sakai, Kiyota" uniqKey="Sakai K" first="Kiyota" last="Sakai">Kiyota Sakai</name>
<affiliation wicri:level="1">
<nlm:affiliation>Department of Applied Biological Chemistry, Faculty of Agriculture, Meijo University, Nagoya, Japan.</nlm:affiliation>
<country xml:lang="fr">Japon</country>
<wicri:regionArea>Department of Applied Biological Chemistry, Faculty of Agriculture, Meijo University, Nagoya</wicri:regionArea>
<wicri:noRegion>Nagoya</wicri:noRegion>
</affiliation>
</author>
<author>
<name sortKey="Matsuzaki, Fumiko" sort="Matsuzaki, Fumiko" uniqKey="Matsuzaki F" first="Fumiko" last="Matsuzaki">Fumiko Matsuzaki</name>
<affiliation wicri:level="4">
<nlm:affiliation>Faculty of Agriculture, Kyushu University, Fukuoka, Japan.</nlm:affiliation>
<country xml:lang="fr">Japon</country>
<wicri:regionArea>Faculty of Agriculture, Kyushu University, Fukuoka</wicri:regionArea>
<orgName type="university">Université de Kyūshū</orgName>
<placeName>
<settlement type="city">Fukuoka</settlement>
<region type="province">Kyūshū</region>
<region type="prefecture">Préfecture de Fukuoka</region>
</placeName>
</affiliation>
<affiliation wicri:level="4">
<nlm:affiliation>Research Center for Transomics Medicine, Medical Institute of Bioregulation, Kyushu University, Fukuoka, Japan.</nlm:affiliation>
<country xml:lang="fr">Japon</country>
<wicri:regionArea>Research Center for Transomics Medicine, Medical Institute of Bioregulation, Kyushu University, Fukuoka</wicri:regionArea>
<orgName type="university">Université de Kyūshū</orgName>
<placeName>
<settlement type="city">Fukuoka</settlement>
<region type="province">Kyūshū</region>
<region type="prefecture">Préfecture de Fukuoka</region>
</placeName>
</affiliation>
</author>
<author>
<name sortKey="Wise, Lisa" sort="Wise, Lisa" uniqKey="Wise L" first="Lisa" last="Wise">Lisa Wise</name>
<affiliation wicri:level="1">
<nlm:affiliation>Department of Applied Biological Chemistry, Faculty of Agriculture, Meijo University, Nagoya, Japan.</nlm:affiliation>
<country xml:lang="fr">Japon</country>
<wicri:regionArea>Department of Applied Biological Chemistry, Faculty of Agriculture, Meijo University, Nagoya</wicri:regionArea>
<wicri:noRegion>Nagoya</wicri:noRegion>
</affiliation>
</author>
<author>
<name sortKey="Sakai, Yu" sort="Sakai, Yu" uniqKey="Sakai Y" first="Yu" last="Sakai">Yu Sakai</name>
<affiliation wicri:level="1">
<nlm:affiliation>Department of Applied Biological Chemistry, Faculty of Agriculture, Meijo University, Nagoya, Japan.</nlm:affiliation>
<country xml:lang="fr">Japon</country>
<wicri:regionArea>Department of Applied Biological Chemistry, Faculty of Agriculture, Meijo University, Nagoya</wicri:regionArea>
<wicri:noRegion>Nagoya</wicri:noRegion>
</affiliation>
</author>
<author>
<name sortKey="Jindou, Sadanari" sort="Jindou, Sadanari" uniqKey="Jindou S" first="Sadanari" last="Jindou">Sadanari Jindou</name>
<affiliation wicri:level="1">
<nlm:affiliation>Faculty of Science and Technology, Meijo University, Nagoya, Japan.</nlm:affiliation>
<country xml:lang="fr">Japon</country>
<wicri:regionArea>Faculty of Science and Technology, Meijo University, Nagoya</wicri:regionArea>
<wicri:noRegion>Nagoya</wicri:noRegion>
</affiliation>
</author>
<author>
<name sortKey="Ichinose, Hirofumi" sort="Ichinose, Hirofumi" uniqKey="Ichinose H" first="Hirofumi" last="Ichinose">Hirofumi Ichinose</name>
<affiliation wicri:level="4">
<nlm:affiliation>Faculty of Agriculture, Kyushu University, Fukuoka, Japan.</nlm:affiliation>
<country xml:lang="fr">Japon</country>
<wicri:regionArea>Faculty of Agriculture, Kyushu University, Fukuoka</wicri:regionArea>
<orgName type="university">Université de Kyūshū</orgName>
<placeName>
<settlement type="city">Fukuoka</settlement>
<region type="province">Kyūshū</region>
<region type="prefecture">Préfecture de Fukuoka</region>
</placeName>
</affiliation>
</author>
<author>
<name sortKey="Takaya, Naoki" sort="Takaya, Naoki" uniqKey="Takaya N" first="Naoki" last="Takaya">Naoki Takaya</name>
<affiliation wicri:level="1">
<nlm:affiliation>Graduate School of Life and Environmental Sciences, University of Tsukuba, Tsukuba, Japan.</nlm:affiliation>
<country xml:lang="fr">Japon</country>
<wicri:regionArea>Graduate School of Life and Environmental Sciences, University of Tsukuba, Tsukuba</wicri:regionArea>
<wicri:noRegion>Tsukuba</wicri:noRegion>
</affiliation>
</author>
<author>
<name sortKey="Kato, Masashi" sort="Kato, Masashi" uniqKey="Kato M" first="Masashi" last="Kato">Masashi Kato</name>
<affiliation wicri:level="1">
<nlm:affiliation>Department of Applied Biological Chemistry, Faculty of Agriculture, Meijo University, Nagoya, Japan.</nlm:affiliation>
<country xml:lang="fr">Japon</country>
<wicri:regionArea>Department of Applied Biological Chemistry, Faculty of Agriculture, Meijo University, Nagoya</wicri:regionArea>
<wicri:noRegion>Nagoya</wicri:noRegion>
</affiliation>
</author>
<author>
<name sortKey="Wariishi, Hiroyuki" sort="Wariishi, Hiroyuki" uniqKey="Wariishi H" first="Hiroyuki" last="Wariishi">Hiroyuki Wariishi</name>
<affiliation wicri:level="4">
<nlm:affiliation>Faculty of Art and Science, Kyushu University, Fukuoka, Japan.</nlm:affiliation>
<country xml:lang="fr">Japon</country>
<wicri:regionArea>Faculty of Art and Science, Kyushu University, Fukuoka</wicri:regionArea>
<orgName type="university">Université de Kyūshū</orgName>
<placeName>
<settlement type="city">Fukuoka</settlement>
<region type="province">Kyūshū</region>
<region type="prefecture">Préfecture de Fukuoka</region>
</placeName>
</affiliation>
</author>
<author>
<name sortKey="Shimizu, Motoyuki" sort="Shimizu, Motoyuki" uniqKey="Shimizu M" first="Motoyuki" last="Shimizu">Motoyuki Shimizu</name>
<affiliation wicri:level="1">
<nlm:affiliation>Department of Applied Biological Chemistry, Faculty of Agriculture, Meijo University, Nagoya, Japan moshimi@meijo-u.ac.jp.</nlm:affiliation>
<country wicri:rule="url">Japon</country>
<wicri:regionArea>Department of Applied Biological Chemistry, Faculty of Agriculture, Meijo University, Nagoya</wicri:regionArea>
<wicri:noRegion>Nagoya</wicri:noRegion>
</affiliation>
</author>
</analytic>
<series>
<title level="j">Applied and environmental microbiology</title>
<idno type="eISSN">1098-5336</idno>
<imprint>
<date when="2018" type="published">2018</date>
</imprint>
</series>
</biblStruct>
</sourceDesc>
</fileDesc>
<profileDesc>
<textClass>
<keywords scheme="KwdEn" xml:lang="en">
<term>Amino Acid Sequence (MeSH)</term>
<term>Catalytic Domain (MeSH)</term>
<term>Cloning, Molecular (MeSH)</term>
<term>Cytochrome P-450 Enzyme System (chemistry)</term>
<term>Cytochrome P-450 Enzyme System (genetics)</term>
<term>Cytochrome P-450 Enzyme System (metabolism)</term>
<term>Escherichia coli (genetics)</term>
<term>Escherichia coli (metabolism)</term>
<term>Fatty Acids (chemistry)</term>
<term>Fatty Acids (metabolism)</term>
<term>Fatty Alcohols (chemistry)</term>
<term>Fatty Alcohols (metabolism)</term>
<term>Fungal Proteins (chemistry)</term>
<term>Fungal Proteins (genetics)</term>
<term>Fungal Proteins (metabolism)</term>
<term>Hydroxylation (MeSH)</term>
<term>Lignin (chemistry)</term>
<term>Lignin (metabolism)</term>
<term>NADP (metabolism)</term>
<term>Oxidation-Reduction (MeSH)</term>
<term>Phanerochaete (chemistry)</term>
<term>Phanerochaete (enzymology)</term>
<term>Phanerochaete (genetics)</term>
<term>Recombinant Proteins (chemistry)</term>
<term>Recombinant Proteins (genetics)</term>
<term>Recombinant Proteins (metabolism)</term>
<term>Sequence Alignment (MeSH)</term>
<term>Substrate Specificity (MeSH)</term>
</keywords>
<keywords scheme="KwdFr" xml:lang="fr">
<term>Acides gras (composition chimique)</term>
<term>Acides gras (métabolisme)</term>
<term>Alcools gras (composition chimique)</term>
<term>Alcools gras (métabolisme)</term>
<term>Alignement de séquences (MeSH)</term>
<term>Clonage moléculaire (MeSH)</term>
<term>Cytochrome P-450 enzyme system (composition chimique)</term>
<term>Cytochrome P-450 enzyme system (génétique)</term>
<term>Cytochrome P-450 enzyme system (métabolisme)</term>
<term>Domaine catalytique (MeSH)</term>
<term>Escherichia coli (génétique)</term>
<term>Escherichia coli (métabolisme)</term>
<term>Hydroxylation (MeSH)</term>
<term>Lignine (composition chimique)</term>
<term>Lignine (métabolisme)</term>
<term>NADP (métabolisme)</term>
<term>Oxydoréduction (MeSH)</term>
<term>Phanerochaete (composition chimique)</term>
<term>Phanerochaete (enzymologie)</term>
<term>Phanerochaete (génétique)</term>
<term>Protéines fongiques (composition chimique)</term>
<term>Protéines fongiques (génétique)</term>
<term>Protéines fongiques (métabolisme)</term>
<term>Protéines recombinantes (composition chimique)</term>
<term>Protéines recombinantes (génétique)</term>
<term>Protéines recombinantes (métabolisme)</term>
<term>Spécificité du substrat (MeSH)</term>
<term>Séquence d'acides aminés (MeSH)</term>
</keywords>
<keywords scheme="MESH" type="chemical" qualifier="chemistry" xml:lang="en">
<term>Cytochrome P-450 Enzyme System</term>
<term>Fatty Acids</term>
<term>Fatty Alcohols</term>
<term>Fungal Proteins</term>
<term>Lignin</term>
<term>Recombinant Proteins</term>
</keywords>
<keywords scheme="MESH" type="chemical" qualifier="genetics" xml:lang="en">
<term>Cytochrome P-450 Enzyme System</term>
<term>Fungal Proteins</term>
<term>Recombinant Proteins</term>
</keywords>
<keywords scheme="MESH" type="chemical" qualifier="metabolism" xml:lang="en">
<term>Cytochrome P-450 Enzyme System</term>
<term>Fatty Acids</term>
<term>Fatty Alcohols</term>
<term>Fungal Proteins</term>
<term>Lignin</term>
<term>NADP</term>
<term>Recombinant Proteins</term>
</keywords>
<keywords scheme="MESH" qualifier="chemistry" xml:lang="en">
<term>Phanerochaete</term>
</keywords>
<keywords scheme="MESH" qualifier="composition chimique" xml:lang="fr">
<term>Acides gras</term>
<term>Alcools gras</term>
<term>Cytochrome P-450 enzyme system</term>
<term>Lignine</term>
<term>Phanerochaete</term>
<term>Protéines fongiques</term>
<term>Protéines recombinantes</term>
</keywords>
<keywords scheme="MESH" qualifier="enzymologie" xml:lang="fr">
<term>Phanerochaete</term>
</keywords>
<keywords scheme="MESH" qualifier="enzymology" xml:lang="en">
<term>Phanerochaete</term>
</keywords>
<keywords scheme="MESH" qualifier="genetics" xml:lang="en">
<term>Escherichia coli</term>
<term>Phanerochaete</term>
</keywords>
<keywords scheme="MESH" qualifier="génétique" xml:lang="fr">
<term>Cytochrome P-450 enzyme system</term>
<term>Escherichia coli</term>
<term>Phanerochaete</term>
<term>Protéines fongiques</term>
<term>Protéines recombinantes</term>
</keywords>
<keywords scheme="MESH" qualifier="metabolism" xml:lang="en">
<term>Escherichia coli</term>
</keywords>
<keywords scheme="MESH" qualifier="métabolisme" xml:lang="fr">
<term>Acides gras</term>
<term>Alcools gras</term>
<term>Cytochrome P-450 enzyme system</term>
<term>Escherichia coli</term>
<term>Lignine</term>
<term>NADP</term>
<term>Protéines fongiques</term>
<term>Protéines recombinantes</term>
</keywords>
<keywords scheme="MESH" xml:lang="en">
<term>Amino Acid Sequence</term>
<term>Catalytic Domain</term>
<term>Cloning, Molecular</term>
<term>Hydroxylation</term>
<term>Oxidation-Reduction</term>
<term>Sequence Alignment</term>
<term>Substrate Specificity</term>
</keywords>
<keywords scheme="MESH" xml:lang="fr">
<term>Alignement de séquences</term>
<term>Clonage moléculaire</term>
<term>Domaine catalytique</term>
<term>Hydroxylation</term>
<term>Oxydoréduction</term>
<term>Spécificité du substrat</term>
<term>Séquence d'acides aminés</term>
</keywords>
</textClass>
</profileDesc>
</teiHeader>
<front>
<div type="abstract" xml:lang="en">The activity of a self-sufficient cytochrome P450 enzyme, CYP505D6, from the lignin-degrading basidiomycete
<i>Phanerochaete chrysosporium</i>
was characterized. Recombinant CYP505D6 was produced in
<i>Escherichia coli</i>
and purified. In the presence of NADPH, CYP505D6 used a series of saturated fatty alcohols with C
<sub>9-18</sub>
carbon chain lengths as the substrates. Hydroxylation occurred at the ω-1 to ω-6 positions of such substrates with C
<sub>9-15</sub>
carbon chain lengths, except for 1-dodecanol, which was hydroxylated at the ω-1 to ω-7 positions. Fatty acids were also substrates of CYP505D6. Based on the sequence alignment, the corresponding amino acid of Tyr51, which is located at the entrance to the active-site pocket in CYP102A1, was Val51 in CYP505D6. To understand the diverse hydroxylation mechanism, wild-type CYP505D6 and its V51Y variant and wild-type CYP102A1 and its Y51V variant were generated, and the products of their reaction with dodecanoic acid were analyzed. Compared with wild-type CYP505D6, its V51Y variant generated few products hydroxylated at the ω-4 to ω-6 positions. The products generated by wild-type CYP102A1 were hydroxylated at the ω-1 to ω-4 positions, whereas its Y51V variant generated ω-1 to ω-7 hydroxydodecanoic acids. These observations indicated that Val51 plays an important role in determining the regiospecificity of fatty acid hydroxylation, at least that at the ω-4 to ω-6 positions. Aromatic compounds, such as naphthalene and 1-naphthol, were also hydroxylated by CYP505D6. These findings highlight a unique broad substrate spectrum of CYP505D6, rendering it an attractive candidate enzyme for the biotechnological industry.
<b>IMPORTANCE</b>
<i>Phanerochaete chrysosporium</i>
is a white-rot fungus whose metabolism of lignin, aromatic pollutants, and lipids has been most extensively studied. This fungus harbors 154 cytochrome P450-encoding genes in the genome. As evidenced in this study,
<i>P. chrysosporium</i>
CYP505D6, a fused protein of P450 and its reductase, hydroxylates fatty alcohols (C
<sub>9-15</sub>
) and fatty acids (C
<sub>9-15</sub>
) at the ω-1 to ω-7 or ω-1 to ω-6 positions, respectively. Naphthalene and 1-naphthol were also hydroxylated, indicating that the substrate specificity of CYP505D6 is broader than those of the known fused proteins CYP102A1 and CYP505A1. The substrate versatility of CYP505D6 makes this enzyme an attractive candidate for biotechnological applications.</div>
</front>
</TEI>
<pubmed>
<MedlineCitation Status="MEDLINE" Owner="NLM">
<PMID Version="1">30171007</PMID>
<DateCompleted>
<Year>2019</Year>
<Month>10</Month>
<Day>04</Day>
</DateCompleted>
<DateRevised>
<Year>2019</Year>
<Month>10</Month>
<Day>07</Day>
</DateRevised>
<Article PubModel="Electronic-Print">
<Journal>
<ISSN IssnType="Electronic">1098-5336</ISSN>
<JournalIssue CitedMedium="Internet">
<Volume>84</Volume>
<Issue>22</Issue>
<PubDate>
<Year>2018</Year>
<Month>11</Month>
<Day>15</Day>
</PubDate>
</JournalIssue>
<Title>Applied and environmental microbiology</Title>
<ISOAbbreviation>Appl Environ Microbiol</ISOAbbreviation>
</Journal>
<ArticleTitle>Biochemical Characterization of CYP505D6, a Self-Sufficient Cytochrome P450 from the White-Rot Fungus Phanerochaete chrysosporium.</ArticleTitle>
<ELocationID EIdType="pii" ValidYN="Y">e01091-18</ELocationID>
<ELocationID EIdType="doi" ValidYN="Y">10.1128/AEM.01091-18</ELocationID>
<Abstract>
<AbstractText>The activity of a self-sufficient cytochrome P450 enzyme, CYP505D6, from the lignin-degrading basidiomycete
<i>Phanerochaete chrysosporium</i>
was characterized. Recombinant CYP505D6 was produced in
<i>Escherichia coli</i>
and purified. In the presence of NADPH, CYP505D6 used a series of saturated fatty alcohols with C
<sub>9-18</sub>
carbon chain lengths as the substrates. Hydroxylation occurred at the ω-1 to ω-6 positions of such substrates with C
<sub>9-15</sub>
carbon chain lengths, except for 1-dodecanol, which was hydroxylated at the ω-1 to ω-7 positions. Fatty acids were also substrates of CYP505D6. Based on the sequence alignment, the corresponding amino acid of Tyr51, which is located at the entrance to the active-site pocket in CYP102A1, was Val51 in CYP505D6. To understand the diverse hydroxylation mechanism, wild-type CYP505D6 and its V51Y variant and wild-type CYP102A1 and its Y51V variant were generated, and the products of their reaction with dodecanoic acid were analyzed. Compared with wild-type CYP505D6, its V51Y variant generated few products hydroxylated at the ω-4 to ω-6 positions. The products generated by wild-type CYP102A1 were hydroxylated at the ω-1 to ω-4 positions, whereas its Y51V variant generated ω-1 to ω-7 hydroxydodecanoic acids. These observations indicated that Val51 plays an important role in determining the regiospecificity of fatty acid hydroxylation, at least that at the ω-4 to ω-6 positions. Aromatic compounds, such as naphthalene and 1-naphthol, were also hydroxylated by CYP505D6. These findings highlight a unique broad substrate spectrum of CYP505D6, rendering it an attractive candidate enzyme for the biotechnological industry.
<b>IMPORTANCE</b>
<i>Phanerochaete chrysosporium</i>
is a white-rot fungus whose metabolism of lignin, aromatic pollutants, and lipids has been most extensively studied. This fungus harbors 154 cytochrome P450-encoding genes in the genome. As evidenced in this study,
<i>P. chrysosporium</i>
CYP505D6, a fused protein of P450 and its reductase, hydroxylates fatty alcohols (C
<sub>9-15</sub>
) and fatty acids (C
<sub>9-15</sub>
) at the ω-1 to ω-7 or ω-1 to ω-6 positions, respectively. Naphthalene and 1-naphthol were also hydroxylated, indicating that the substrate specificity of CYP505D6 is broader than those of the known fused proteins CYP102A1 and CYP505A1. The substrate versatility of CYP505D6 makes this enzyme an attractive candidate for biotechnological applications.</AbstractText>
<CopyrightInformation>Copyright © 2018 American Society for Microbiology.</CopyrightInformation>
</Abstract>
<AuthorList CompleteYN="Y">
<Author ValidYN="Y" EqualContrib="Y">
<LastName>Sakai</LastName>
<ForeName>Kiyota</ForeName>
<Initials>K</Initials>
<AffiliationInfo>
<Affiliation>Department of Applied Biological Chemistry, Faculty of Agriculture, Meijo University, Nagoya, Japan.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y" EqualContrib="Y">
<LastName>Matsuzaki</LastName>
<ForeName>Fumiko</ForeName>
<Initials>F</Initials>
<AffiliationInfo>
<Affiliation>Faculty of Agriculture, Kyushu University, Fukuoka, Japan.</Affiliation>
</AffiliationInfo>
<AffiliationInfo>
<Affiliation>Research Center for Transomics Medicine, Medical Institute of Bioregulation, Kyushu University, Fukuoka, Japan.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y">
<LastName>Wise</LastName>
<ForeName>Lisa</ForeName>
<Initials>L</Initials>
<AffiliationInfo>
<Affiliation>Department of Applied Biological Chemistry, Faculty of Agriculture, Meijo University, Nagoya, Japan.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y">
<LastName>Sakai</LastName>
<ForeName>Yu</ForeName>
<Initials>Y</Initials>
<AffiliationInfo>
<Affiliation>Department of Applied Biological Chemistry, Faculty of Agriculture, Meijo University, Nagoya, Japan.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y">
<LastName>Jindou</LastName>
<ForeName>Sadanari</ForeName>
<Initials>S</Initials>
<AffiliationInfo>
<Affiliation>Faculty of Science and Technology, Meijo University, Nagoya, Japan.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y">
<LastName>Ichinose</LastName>
<ForeName>Hirofumi</ForeName>
<Initials>H</Initials>
<AffiliationInfo>
<Affiliation>Faculty of Agriculture, Kyushu University, Fukuoka, Japan.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y">
<LastName>Takaya</LastName>
<ForeName>Naoki</ForeName>
<Initials>N</Initials>
<AffiliationInfo>
<Affiliation>Graduate School of Life and Environmental Sciences, University of Tsukuba, Tsukuba, Japan.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y">
<LastName>Kato</LastName>
<ForeName>Masashi</ForeName>
<Initials>M</Initials>
<AffiliationInfo>
<Affiliation>Department of Applied Biological Chemistry, Faculty of Agriculture, Meijo University, Nagoya, Japan.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y">
<LastName>Wariishi</LastName>
<ForeName>Hiroyuki</ForeName>
<Initials>H</Initials>
<AffiliationInfo>
<Affiliation>Faculty of Art and Science, Kyushu University, Fukuoka, Japan.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y">
<LastName>Shimizu</LastName>
<ForeName>Motoyuki</ForeName>
<Initials>M</Initials>
<Identifier Source="ORCID">0000-0002-6907-6367</Identifier>
<AffiliationInfo>
<Affiliation>Department of Applied Biological Chemistry, Faculty of Agriculture, Meijo University, Nagoya, Japan moshimi@meijo-u.ac.jp.</Affiliation>
</AffiliationInfo>
</Author>
</AuthorList>
<Language>eng</Language>
<PublicationTypeList>
<PublicationType UI="D016428">Journal Article</PublicationType>
<PublicationType UI="D013485">Research Support, Non-U.S. Gov't</PublicationType>
</PublicationTypeList>
<ArticleDate DateType="Electronic">
<Year>2018</Year>
<Month>10</Month>
<Day>30</Day>
</ArticleDate>
</Article>
<MedlineJournalInfo>
<Country>United States</Country>
<MedlineTA>Appl Environ Microbiol</MedlineTA>
<NlmUniqueID>7605801</NlmUniqueID>
<ISSNLinking>0099-2240</ISSNLinking>
</MedlineJournalInfo>
<ChemicalList>
<Chemical>
<RegistryNumber>0</RegistryNumber>
<NameOfSubstance UI="D005227">Fatty Acids</NameOfSubstance>
</Chemical>
<Chemical>
<RegistryNumber>0</RegistryNumber>
<NameOfSubstance UI="D005233">Fatty Alcohols</NameOfSubstance>
</Chemical>
<Chemical>
<RegistryNumber>0</RegistryNumber>
<NameOfSubstance UI="D005656">Fungal Proteins</NameOfSubstance>
</Chemical>
<Chemical>
<RegistryNumber>0</RegistryNumber>
<NameOfSubstance UI="D011994">Recombinant Proteins</NameOfSubstance>
</Chemical>
<Chemical>
<RegistryNumber>53-59-8</RegistryNumber>
<NameOfSubstance UI="D009249">NADP</NameOfSubstance>
</Chemical>
<Chemical>
<RegistryNumber>9005-53-2</RegistryNumber>
<NameOfSubstance UI="D008031">Lignin</NameOfSubstance>
</Chemical>
<Chemical>
<RegistryNumber>9035-51-2</RegistryNumber>
<NameOfSubstance UI="D003577">Cytochrome P-450 Enzyme System</NameOfSubstance>
</Chemical>
</ChemicalList>
<CitationSubset>IM</CitationSubset>
<MeshHeadingList>
<MeshHeading>
<DescriptorName UI="D000595" MajorTopicYN="N">Amino Acid Sequence</DescriptorName>
</MeshHeading>
<MeshHeading>
<DescriptorName UI="D020134" MajorTopicYN="N">Catalytic Domain</DescriptorName>
</MeshHeading>
<MeshHeading>
<DescriptorName UI="D003001" MajorTopicYN="N">Cloning, Molecular</DescriptorName>
</MeshHeading>
<MeshHeading>
<DescriptorName UI="D003577" MajorTopicYN="N">Cytochrome P-450 Enzyme System</DescriptorName>
<QualifierName UI="Q000737" MajorTopicYN="Y">chemistry</QualifierName>
<QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName>
<QualifierName UI="Q000378" MajorTopicYN="N">metabolism</QualifierName>
</MeshHeading>
<MeshHeading>
<DescriptorName UI="D004926" MajorTopicYN="N">Escherichia coli</DescriptorName>
<QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName>
<QualifierName UI="Q000378" MajorTopicYN="N">metabolism</QualifierName>
</MeshHeading>
<MeshHeading>
<DescriptorName UI="D005227" MajorTopicYN="N">Fatty Acids</DescriptorName>
<QualifierName UI="Q000737" MajorTopicYN="N">chemistry</QualifierName>
<QualifierName UI="Q000378" MajorTopicYN="N">metabolism</QualifierName>
</MeshHeading>
<MeshHeading>
<DescriptorName UI="D005233" MajorTopicYN="N">Fatty Alcohols</DescriptorName>
<QualifierName UI="Q000737" MajorTopicYN="N">chemistry</QualifierName>
<QualifierName UI="Q000378" MajorTopicYN="N">metabolism</QualifierName>
</MeshHeading>
<MeshHeading>
<DescriptorName UI="D005656" MajorTopicYN="N">Fungal Proteins</DescriptorName>
<QualifierName UI="Q000737" MajorTopicYN="Y">chemistry</QualifierName>
<QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName>
<QualifierName UI="Q000378" MajorTopicYN="N">metabolism</QualifierName>
</MeshHeading>
<MeshHeading>
<DescriptorName UI="D006900" MajorTopicYN="N">Hydroxylation</DescriptorName>
</MeshHeading>
<MeshHeading>
<DescriptorName UI="D008031" MajorTopicYN="N">Lignin</DescriptorName>
<QualifierName UI="Q000737" MajorTopicYN="N">chemistry</QualifierName>
<QualifierName UI="Q000378" MajorTopicYN="N">metabolism</QualifierName>
</MeshHeading>
<MeshHeading>
<DescriptorName UI="D009249" MajorTopicYN="N">NADP</DescriptorName>
<QualifierName UI="Q000378" MajorTopicYN="N">metabolism</QualifierName>
</MeshHeading>
<MeshHeading>
<DescriptorName UI="D010084" MajorTopicYN="N">Oxidation-Reduction</DescriptorName>
</MeshHeading>
<MeshHeading>
<DescriptorName UI="D020075" MajorTopicYN="N">Phanerochaete</DescriptorName>
<QualifierName UI="Q000737" MajorTopicYN="N">chemistry</QualifierName>
<QualifierName UI="Q000201" MajorTopicYN="Y">enzymology</QualifierName>
<QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName>
</MeshHeading>
<MeshHeading>
<DescriptorName UI="D011994" MajorTopicYN="N">Recombinant Proteins</DescriptorName>
<QualifierName UI="Q000737" MajorTopicYN="N">chemistry</QualifierName>
<QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName>
<QualifierName UI="Q000378" MajorTopicYN="N">metabolism</QualifierName>
</MeshHeading>
<MeshHeading>
<DescriptorName UI="D016415" MajorTopicYN="N">Sequence Alignment</DescriptorName>
</MeshHeading>
<MeshHeading>
<DescriptorName UI="D013379" MajorTopicYN="N">Substrate Specificity</DescriptorName>
</MeshHeading>
</MeshHeadingList>
<KeywordList Owner="NOTNLM">
<Keyword MajorTopicYN="Y">CYP102A1</Keyword>
<Keyword MajorTopicYN="Y">CYP505D6</Keyword>
<Keyword MajorTopicYN="Y">Phanerochaete chrysosporium</Keyword>
<Keyword MajorTopicYN="Y">self-sufficient P450</Keyword>
<Keyword MajorTopicYN="Y">white-rot fungus</Keyword>
</KeywordList>
</MedlineCitation>
<PubmedData>
<History>
<PubMedPubDate PubStatus="received">
<Year>2018</Year>
<Month>05</Month>
<Day>08</Day>
</PubMedPubDate>
<PubMedPubDate PubStatus="accepted">
<Year>2018</Year>
<Month>08</Month>
<Day>29</Day>
</PubMedPubDate>
<PubMedPubDate PubStatus="pubmed">
<Year>2018</Year>
<Month>9</Month>
<Day>2</Day>
<Hour>6</Hour>
<Minute>0</Minute>
</PubMedPubDate>
<PubMedPubDate PubStatus="medline">
<Year>2019</Year>
<Month>10</Month>
<Day>8</Day>
<Hour>6</Hour>
<Minute>0</Minute>
</PubMedPubDate>
<PubMedPubDate PubStatus="entrez">
<Year>2018</Year>
<Month>9</Month>
<Day>2</Day>
<Hour>6</Hour>
<Minute>0</Minute>
</PubMedPubDate>
</History>
<PublicationStatus>epublish</PublicationStatus>
<ArticleIdList>
<ArticleId IdType="pubmed">30171007</ArticleId>
<ArticleId IdType="pii">AEM.01091-18</ArticleId>
<ArticleId IdType="doi">10.1128/AEM.01091-18</ArticleId>
<ArticleId IdType="pmc">PMC6210119</ArticleId>
</ArticleIdList>
<ReferenceList>
<Reference>
<Citation>Appl Environ Microbiol. 1996 Jul;62(7):2554-9</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">16535361</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>Chem Commun (Camb). 2015 Feb 11;51(12):2208-24</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">25483552</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>Biotechnol Prog. 1999 Jul;15(4):706-14</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">10441362</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>Biochemistry. 1997 Feb 18;36(7):1567-72</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">9048540</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>J Biol Chem. 2016 Oct 14;291(42):22207-22217</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">27573241</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>AAPS PharmSciTech. 2017 May;18(4):1261-1269</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">27480442</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>Biochem Biophys Res Commun. 2004 Nov 5;324(1):387-93</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">15465031</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>Biochim Biophys Acta. 1977 Jun 22;487(3):487-94</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">18202</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>Appl Microbiol Biotechnol. 2004 Dec;66(3):312-7</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">15448939</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>Nat Biotechnol. 2004 Jun;22(6):695-700</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">15122302</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>Antiviral Res. 2016 Sep;133:191-5</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">27520386</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>Biotechnol Bioeng. 2005 Jun 20;90(6):723-31</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">15858792</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>J Biol Chem. 1974 Mar 25;249(6):1880-8</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">4150419</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>J Biol Chem. 1964 Jul;239:2370-8</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">14209971</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>Chem Soc Rev. 2012 Feb 7;41(3):1218-60</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">22008827</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>Biochim Biophys Acta. 2016 Jun;1860(6):1149-62</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">26825771</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>Eur J Biochem. 2002 Apr;269(8):2075-82</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">11985584</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>Biochim Biophys Acta. 1976 May 27;431(2):249-56</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">7299</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>Appl Microbiol Biotechnol. 2007 Jul;75(5):1055-61</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">17468867</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>J Biol Chem. 1998 Dec 4;273(49):32528-34</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">9829987</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>Biochem J. 1997 Oct 15;327 ( Pt 2):537-44</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">9359427</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>FEMS Microbiol Lett. 2004 May 15;234(2):255-60</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">15135530</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>J Biol Chem. 2000 Dec 15;275(50):39734-40</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">10995755</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>Cell. 2014 Oct 9;159(2):318-32</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">25303528</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>Biochem Biophys Res Commun. 2013 Aug 23;438(2):289-94</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">23886957</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>J Lipid Res. 2012 Jul;53(7):1327-35</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">22517924</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>Diabetes. 2016 Sep;65(9):2580-90</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">27313314</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>FEMS Microbiol Lett. 1996 Jan 1;135(1):51-5</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">8598277</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>Trends Biotechnol. 2007 Jul;25(7):289-98</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">17532492</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>Methods Mol Biol. 1999;131:9-23</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">10494539</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>Appl Environ Microbiol. 2013 Apr;79(8):2692-702</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">23416995</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>Crit Rev Microbiol. 2012 Nov;38(4):339-63</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">22624627</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>Science. 1993 Aug 6;261(5122):731-6</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">8342039</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>J Phys Chem B. 2009 Aug 13;113(32):11101-8</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">19621943</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>Biomed Chromatogr. 2015 Jan;29(1):156-60</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">24898098</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>Appl Microbiol Biotechnol. 2006 Jun;71(1):13-22</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">16604360</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>Arch Biochem Biophys. 2017 Feb 1;615:15-21</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">28048974</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>Annu Rev Microbiol. 1987;41:465-505</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">3318677</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>Biochem J. 1999 Apr 15;339 ( Pt 2):371-9</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">10191269</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>Appl Microbiol Biotechnol. 2001 Nov;57(4):563-71</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">11762605</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>Appl Microbiol Biotechnol. 2016 Dec;100(24):10375-10384</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">27344594</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>J Biochem. 1996 Mar;119(3):435-40</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">8830036</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>J Biol Chem. 1997 Jan 10;272(2):1127-35</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">8995412</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>Fungal Biol. 2017 Feb;121(2):158-171</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">28089047</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>Biochemistry. 2004 May 11;43(18):5474-87</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">15122913</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>PLoS One. 2012;7(2):e31317</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">22347463</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>Lipids. 1981 Oct;16(10):721-5</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">6975411</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>Nat Struct Biol. 1997 Feb;4(2):140-6</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">9033595</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>Plant Physiol. 2012 Jul;159(3):1138-48</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">22635113</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>J Biol Chem. 1999 Dec 17;274(51):36097-106</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">10593892</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>Appl Environ Microbiol. 2001 Dec;67(12):5735-9</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">11722930</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>J Biol Chem. 1986 Jun 5;261(16):7160-9</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">3086309</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>Proteomics. 2005 Oct;5(15):3919-31</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">16217726</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>BMC Genomics. 2005 Jun 14;6:92</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">15955240</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>Mol Genet Genomics. 2005 Dec;274(5):454-66</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">16231151</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>Biochim Biophys Acta. 1975 Jun 23;388(3):305-17</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">805599</ArticleId>
</ArticleIdList>
</Reference>
</ReferenceList>
</PubmedData>
</pubmed>
<affiliations>
<list>
<country>
<li>Japon</li>
</country>
<region>
<li>Kyūshū</li>
<li>Préfecture de Fukuoka</li>
</region>
<settlement>
<li>Fukuoka</li>
</settlement>
<orgName>
<li>Université de Kyūshū</li>
</orgName>
</list>
<tree>
<country name="Japon">
<noRegion>
<name sortKey="Sakai, Kiyota" sort="Sakai, Kiyota" uniqKey="Sakai K" first="Kiyota" last="Sakai">Kiyota Sakai</name>
</noRegion>
<name sortKey="Ichinose, Hirofumi" sort="Ichinose, Hirofumi" uniqKey="Ichinose H" first="Hirofumi" last="Ichinose">Hirofumi Ichinose</name>
<name sortKey="Jindou, Sadanari" sort="Jindou, Sadanari" uniqKey="Jindou S" first="Sadanari" last="Jindou">Sadanari Jindou</name>
<name sortKey="Kato, Masashi" sort="Kato, Masashi" uniqKey="Kato M" first="Masashi" last="Kato">Masashi Kato</name>
<name sortKey="Matsuzaki, Fumiko" sort="Matsuzaki, Fumiko" uniqKey="Matsuzaki F" first="Fumiko" last="Matsuzaki">Fumiko Matsuzaki</name>
<name sortKey="Matsuzaki, Fumiko" sort="Matsuzaki, Fumiko" uniqKey="Matsuzaki F" first="Fumiko" last="Matsuzaki">Fumiko Matsuzaki</name>
<name sortKey="Sakai, Yu" sort="Sakai, Yu" uniqKey="Sakai Y" first="Yu" last="Sakai">Yu Sakai</name>
<name sortKey="Shimizu, Motoyuki" sort="Shimizu, Motoyuki" uniqKey="Shimizu M" first="Motoyuki" last="Shimizu">Motoyuki Shimizu</name>
<name sortKey="Takaya, Naoki" sort="Takaya, Naoki" uniqKey="Takaya N" first="Naoki" last="Takaya">Naoki Takaya</name>
<name sortKey="Wariishi, Hiroyuki" sort="Wariishi, Hiroyuki" uniqKey="Wariishi H" first="Hiroyuki" last="Wariishi">Hiroyuki Wariishi</name>
<name sortKey="Wise, Lisa" sort="Wise, Lisa" uniqKey="Wise L" first="Lisa" last="Wise">Lisa Wise</name>
</country>
</tree>
</affiliations>
</record>

Pour manipuler ce document sous Unix (Dilib)

EXPLOR_STEP=$WICRI_ROOT/Bois/explor/PhanerochaeteV1/Data/Main/Exploration
HfdSelect -h $EXPLOR_STEP/biblio.hfd -nk 000135 | SxmlIndent | more

Ou

HfdSelect -h $EXPLOR_AREA/Data/Main/Exploration/biblio.hfd -nk 000135 | SxmlIndent | more

Pour mettre un lien sur cette page dans le réseau Wicri

{{Explor lien
   |wiki=    Bois
   |area=    PhanerochaeteV1
   |flux=    Main
   |étape=   Exploration
   |type=    RBID
   |clé=     pubmed:30171007
   |texte=   Biochemical Characterization of CYP505D6, a Self-Sufficient Cytochrome P450 from the White-Rot Fungus Phanerochaete chrysosporium.
}}

Pour générer des pages wiki

HfdIndexSelect -h $EXPLOR_AREA/Data/Main/Exploration/RBID.i   -Sk "pubmed:30171007" \
       | HfdSelect -Kh $EXPLOR_AREA/Data/Main/Exploration/biblio.hfd   \
       | NlmPubMed2Wicri -a PhanerochaeteV1 

Wicri

This area was generated with Dilib version V0.6.37.
Data generation: Fri Nov 13 18:33:39 2020. Site generation: Fri Nov 13 18:35:20 2020